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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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V
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W
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X
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Y
_
__init__() (clusterking.benchmark.AbstractBenchmark method)
(clusterking.benchmark.AbstractBenchmarkResult method)
(clusterking.benchmark.Benchmark method)
(clusterking.cluster.Cluster method)
(clusterking.cluster.ClusterResult method)
(clusterking.cluster.HierarchyCluster method)
(clusterking.cluster.HierarchyClusterResult method)
(clusterking.cluster.KmeansCluster method)
(clusterking.data.DFMD method)
(clusterking.data.Data method)
(clusterking.data.DataWithErrors method)
(clusterking.plots.BundlePlot method)
(clusterking.plots.ClusterPlot method)
(clusterking.plots.ColorScheme method)
(clusterking.result.AbstractResult method)
(clusterking.result.DataResult method)
(clusterking.scan.Scanner method)
(clusterking.scan.ScannerResult method)
(clusterking.scan.WilsonScanner method)
(clusterking.stability.fom.AverageBMProximityFOM method)
(clusterking.stability.fom.FOM method)
(clusterking.stability.fom.FOMResult method)
(clusterking.stability.fom.NClusters method)
(clusterking.stability.noisysamplestability.NoisySample method)
(clusterking.stability.noisysamplestability.NoisySampleResult method)
(clusterking.stability.noisysamplestability.NoisySampleStabilityTester method)
(clusterking.stability.noisysamplestability.NoisySampleStabilityTesterResult method)
(clusterking.stability.preprocessor.ClusterMatcher method)
(clusterking.stability.preprocessor.ClusterMatcherResult method)
(clusterking.stability.preprocessor.Preprocessor method)
(clusterking.stability.preprocessor.PreprocessorResult method)
(clusterking.stability.stabilitytester.AbstractStabilityTester method)
(clusterking.stability.stabilitytester.SimpleStabilityTesterResult method)
(clusterking.stability.subsamplestability.SubSampleStabilityTester method)
(clusterking.stability.subsamplestability.SubSampleStabilityVsFraction method)
(clusterking.util.testing.MyTestCase method)
(clusterking.worker.AbstractWorker method)
(clusterking.worker.DataWorker method)
A
abs2rel_cov() (in module clusterking.maths.statistics)
abs_cov (clusterking.data.DataWithErrors attribute)
AbstractBenchmark (class in clusterking.benchmark)
AbstractBenchmarkResult (class in clusterking.benchmark)
AbstractResult (class in clusterking.result)
AbstractStabilityTester (class in clusterking.stability.stabilitytester)
AbstractWorker (class in clusterking.worker)
add_err_corr() (clusterking.data.DataWithErrors method)
add_err_cov() (clusterking.data.DataWithErrors method)
add_err_maxcorr() (clusterking.data.DataWithErrors method)
add_err_poisson() (clusterking.data.DataWithErrors method)
add_err_uncorr() (clusterking.data.DataWithErrors method)
add_fom() (clusterking.stability.stabilitytester.AbstractStabilityTester method)
add_rel_err_corr() (clusterking.data.DataWithErrors method)
add_rel_err_cov() (clusterking.data.DataWithErrors method)
add_rel_err_maxcorr() (clusterking.data.DataWithErrors method)
add_rel_err_uncorr() (clusterking.data.DataWithErrors method)
add_spoints_noise() (clusterking.scan.Scanner method)
animate_bundle() (clusterking.plots.BundlePlot method)
aspect_ratio (clusterking.plots.ClusterPlot attribute)
assertAllClose() (clusterking.util.testing.MyTestCase method)
AverageBMProximityFOM (class in clusterking.stability.fom)
ax (clusterking.plots.BundlePlot attribute)
B
basis (clusterking.scan.WilsonScanner attribute)
Benchmark (class in clusterking.benchmark)
BenchmarkResult (class in clusterking.benchmark)
bin_cols (clusterking.data.Data attribute)
bin_function() (in module clusterking.maths.binning)
BMFOM (class in clusterking.stability.fom)
box_plot() (clusterking.plots.BundlePlot method)
bpoint_column (clusterking.plots.ClusterPlot attribute)
bpoint_marker_size (clusterking.plots.ClusterPlot attribute)
BpointList (class in clusterking.stability.fom)
BundlePlot (class in clusterking.plots)
C
CCFOM (class in clusterking.stability.fom)
chi2() (in module clusterking.maths.metric)
chi2_metric() (in module clusterking.maths.metric)
Cluster (class in clusterking.cluster)
cluster_colors (clusterking.plots.ColorScheme attribute)
cluster_column (clusterking.benchmark.AbstractBenchmark attribute)
(clusterking.plots.BundlePlot attribute)
(clusterking.plots.ClusterPlot attribute)
clusterking.benchmark (module)
clusterking.cluster (module)
clusterking.data (module)
clusterking.maths (module)
clusterking.maths.binning (module)
clusterking.maths.metric (module)
clusterking.maths.statistics (module)
clusterking.plots (module)
clusterking.result (module)
clusterking.scan (module)
clusterking.stability (module)
clusterking.stability.fom (module)
clusterking.stability.noisysamplestability (module)
clusterking.stability.preprocessor (module)
clusterking.stability.stabilitytester (module)
clusterking.stability.subsamplestability (module)
clusterking.util (module)
clusterking.util.cli (module)
clusterking.util.log (module)
clusterking.util.metadata (module)
clusterking.util.testing (module)
clusterking.worker (module)
ClusterMatcher (class in clusterking.stability.preprocessor)
ClusterMatcherResult (class in clusterking.stability.preprocessor)
ClusterPlot (class in clusterking.plots)
ClusterResult (class in clusterking.cluster)
clusters() (clusterking.data.Data method)
coeffs (clusterking.scan.Scanner attribute)
(clusterking.scan.ScannerResult attribute)
color_scheme (clusterking.plots.ClusterPlot attribute)
ColorScheme (class in clusterking.plots)
configure_variable() (clusterking.data.Data method)
copy() (clusterking.data.DFMD method)
corr() (clusterking.data.DataWithErrors method)
corr2cov() (in module clusterking.maths.statistics)
cov() (clusterking.data.DataWithErrors method)
cov2corr() (in module clusterking.maths.statistics)
cov2err() (in module clusterking.maths.statistics)
D
Data (class in clusterking.data)
data (clusterking.plots.BundlePlot attribute)
(clusterking.plots.ClusterPlot attribute)
data() (clusterking.data.Data method)
data_id (clusterking.cluster.HierarchyClusterResult attribute)
DataResult (class in clusterking.result)
DataWithErrors (class in clusterking.data)
DataWorker (class in clusterking.worker)
default_marker_size (clusterking.plots.ClusterPlot attribute)
DeltaNClusters (class in clusterking.stability.fom)
demo() (clusterking.plots.ColorScheme method)
demo_faded() (clusterking.plots.ColorScheme method)
dendrogram() (clusterking.cluster.HierarchyClusterResult method)
df (clusterking.data.DFMD attribute)
DFMD (class in clusterking.data)
draw_legend (clusterking.plots.BundlePlot attribute)
(clusterking.plots.ClusterPlot attribute)
E
eft (clusterking.scan.WilsonScanner attribute)
err() (clusterking.data.DataWithErrors method)
err_plot() (clusterking.plots.BundlePlot method)
F
faded_colormap() (clusterking.plots.ColorScheme method)
failsafe_serialize() (in module clusterking.util.metadata)
fig (clusterking.plots.BundlePlot attribute)
(clusterking.plots.ClusterPlot attribute)
fig_base_size (clusterking.plots.ClusterPlot attribute)
figsize (clusterking.plots.ClusterPlot attribute)
fill() (clusterking.plots.ClusterPlot method)
find_closest_bpoints() (clusterking.data.Data method)
find_closest_spoints() (clusterking.data.Data method)
FirstComeFirstServe1DClusterMatcher (class in clusterking.stability.preprocessor)
fix_param() (clusterking.data.Data method)
FOM (class in clusterking.stability.fom)
FOMResult (class in clusterking.stability.fom)
G
get_cluster_color() (clusterking.plots.ColorScheme method)
get_cluster_colors_faded() (clusterking.plots.ColorScheme method)
get_clusters() (clusterking.cluster.ClusterResult method)
get_err_color() (clusterking.plots.ColorScheme method)
get_git_info() (in module clusterking.util.metadata)
get_logger() (in module clusterking.util.log)
get_param_values() (clusterking.data.Data method)
get_version() (in module clusterking.util.metadata)
H
handle_overwrite() (in module clusterking.util.cli)
hierarchy (clusterking.cluster.HierarchyClusterResult attribute)
HierarchyCluster (class in clusterking.cluster)
HierarchyClusterResult (class in clusterking.cluster)
I
imaginary_prefix (clusterking.scan.Scanner attribute)
(clusterking.scan.ScannerResult attribute)
is_testing_mode() (in module clusterking.util.testing)
K
KmeansCluster (class in clusterking.cluster)
KmeansClusterResult (class in clusterking.cluster)
kv_formatter (clusterking.plots.ClusterPlot attribute)
L
load() (clusterking.stability.noisysamplestability.NoisySampleResult class method)
(clusterking.stability.stabilitytester.SimpleStabilityTesterResult class method)
load_git_info() (in module clusterking.util.metadata)
log (clusterking.data.DFMD attribute)
(clusterking.plots.BundlePlot attribute)
(clusterking.plots.ClusterPlot attribute)
M
markers (clusterking.plots.ClusterPlot attribute)
MatchingClusters (class in clusterking.stability.fom)
max_cols (clusterking.plots.ClusterPlot attribute)
max_d (clusterking.cluster.HierarchyCluster attribute)
max_subplots (clusterking.plots.ClusterPlot attribute)
md (clusterking.cluster.Cluster attribute)
(clusterking.data.DFMD attribute)
metric (clusterking.cluster.HierarchyCluster attribute)
MyTestCase (class in clusterking.util.testing)
N
n (clusterking.data.Data attribute)
name (clusterking.stability.fom.FOM attribute)
(clusterking.stability.preprocessor.Preprocessor attribute)
named_averaging_fcts (clusterking.stability.fom.AverageBMProximityFOM attribute)
named_metric_fcts (clusterking.stability.fom.AverageBMProximityFOM attribute)
nbins (clusterking.data.Data attribute)
NClusters (class in clusterking.stability.fom)
nested_dict() (in module clusterking.util.metadata)
NoisySample (class in clusterking.stability.noisysamplestability)
NoisySampleResult (class in clusterking.stability.noisysamplestability)
NoisySampleStabilityTester (class in clusterking.stability.noisysamplestability)
NoisySampleStabilityTesterResult (class in clusterking.stability.noisysamplestability)
norms() (clusterking.data.Data method)
npars (clusterking.data.Data attribute)
O
only_bpoints() (clusterking.data.Data method)
P
par_cols (clusterking.data.Data attribute)
plot_bpoint_distance_matrix() (clusterking.data.Data method)
plot_bundles() (clusterking.plots.BundlePlot method)
plot_clusters_fill() (clusterking.data.Data method)
plot_clusters_scatter() (clusterking.data.Data method)
plot_dist() (clusterking.data.Data method)
plot_dist_box() (clusterking.data.Data method)
plot_dist_err() (clusterking.data.DataWithErrors method)
plot_dist_minmax() (clusterking.data.Data method)
plot_histogram() (in module clusterking.plots)
plot_minmax() (clusterking.plots.BundlePlot method)
poisson_errors (clusterking.data.DataWithErrors attribute)
poisson_errors_scale (clusterking.data.DataWithErrors attribute)
Preprocessor (class in clusterking.stability.preprocessor)
preprocessor (clusterking.stability.fom.FOM attribute)
PreprocessorResult (class in clusterking.stability.preprocessor)
R
rel2abs_cov() (in module clusterking.maths.statistics)
rel_cov (clusterking.data.DataWithErrors attribute)
rename_clusters() (clusterking.data.Data method)
reset_errors() (clusterking.data.DataWithErrors method)
run() (clusterking.benchmark.AbstractBenchmark method)
(clusterking.benchmark.Benchmark method)
(clusterking.cluster.Cluster method)
(clusterking.cluster.HierarchyCluster method)
(clusterking.cluster.KmeansCluster method)
(clusterking.scan.Scanner method)
(clusterking.stability.fom.FOM method)
(clusterking.stability.noisysamplestability.NoisySample method)
(clusterking.stability.noisysamplestability.NoisySampleStabilityTester method)
(clusterking.stability.preprocessor.ClusterMatcher method)
(clusterking.stability.preprocessor.FirstComeFirstServe1DClusterMatcher method)
(clusterking.stability.preprocessor.Preprocessor method)
(clusterking.stability.preprocessor.TrivialClusterMatcher method)
(clusterking.stability.stabilitytester.AbstractStabilityTester method)
(clusterking.stability.subsamplestability.SubSampleStabilityTester method)
(clusterking.stability.subsamplestability.SubSampleStabilityVsFraction method)
(clusterking.worker.AbstractWorker method)
(clusterking.worker.DataWorker method)
S
sample_param() (clusterking.data.Data method)
sample_param_random() (clusterking.data.Data method)
samples (clusterking.stability.noisysamplestability.NoisySampleStabilityTesterResult attribute)
save_git_info() (in module clusterking.util.metadata)
savefig() (clusterking.plots.ClusterPlot method)
scale (clusterking.scan.WilsonScanner attribute)
Scanner (class in clusterking.scan)
ScannerResult (class in clusterking.scan)
scatter() (clusterking.plots.ClusterPlot method)
set_averaging() (clusterking.stability.fom.AverageBMProximityFOM method)
set_cluster_column() (clusterking.benchmark.AbstractBenchmark method)
set_dfunction() (clusterking.scan.Scanner method)
set_fcluster_options() (clusterking.cluster.HierarchyCluster method)
set_fom() (clusterking.benchmark.Benchmark method)
set_global_log_level() (in module clusterking.util.log)
set_hierarchy_options() (clusterking.cluster.HierarchyCluster method)
set_imaginary_prefix() (clusterking.scan.Scanner method)
set_kmeans_options() (clusterking.cluster.KmeansCluster method)
set_max_d() (clusterking.cluster.HierarchyCluster method)
set_metric() (clusterking.benchmark.Benchmark method)
(clusterking.cluster.HierarchyCluster method)
(clusterking.stability.fom.AverageBMProximityFOM method)
set_name() (clusterking.stability.fom.FOM method)
set_no_workers() (clusterking.scan.Scanner method)
set_noise() (clusterking.stability.noisysamplestability.NoisySample method)
set_preprocessor() (clusterking.stability.fom.FOM method)
set_progress_bar() (clusterking.scan.Scanner method)
(clusterking.stability.subsamplestability.SubSampleStabilityTester method)
set_repeat() (clusterking.stability.noisysamplestability.NoisySample method)
(clusterking.stability.subsamplestability.SubSampleStabilityTester method)
set_sampling() (clusterking.stability.subsamplestability.SubSampleStabilityTester method)
set_spoints_equidist() (clusterking.scan.Scanner method)
set_spoints_grid() (clusterking.scan.Scanner method)
set_testing_mode() (in module clusterking.util.testing)
SimpleStabilityTesterResult (class in clusterking.stability.stabilitytester)
spoints (clusterking.scan.Scanner attribute)
(clusterking.scan.ScannerResult attribute)
StabilityTesterResult (class in clusterking.stability.stabilitytester)
SubSampleStabilityTester (class in clusterking.stability.subsamplestability)
SubSampleStabilityTesterResult (class in clusterking.stability.subsamplestability)
SubSampleStabilityVsFraction (class in clusterking.stability.subsamplestability)
SubSampleStabilityVsFractionResult (class in clusterking.stability.subsamplestability)
T
test_jupyter_notebook() (in module clusterking.util.testing)
title (clusterking.plots.BundlePlot attribute)
to_colormap() (clusterking.plots.ColorScheme method)
TrivialClusterMatcher (class in clusterking.stability.preprocessor)
turn_into_nested_dict() (in module clusterking.util.metadata)
V
version_info() (in module clusterking.util.metadata)
W
WilsonScanner (class in clusterking.scan)
WilsonScannerResult (class in clusterking.scan)
worker_id (clusterking.cluster.HierarchyClusterResult attribute)
write() (clusterking.benchmark.AbstractBenchmarkResult method)
(clusterking.cluster.ClusterResult method)
(clusterking.data.DFMD method)
(clusterking.result.DataResult method)
(clusterking.scan.ScannerResult method)
(clusterking.stability.noisysamplestability.NoisySampleResult method)
(clusterking.stability.stabilitytester.SimpleStabilityTesterResult method)
X
xlabel (clusterking.plots.BundlePlot attribute)
xrange (clusterking.plots.BundlePlot attribute)
Y
ylabel (clusterking.plots.BundlePlot attribute)
yn_prompt() (in module clusterking.util.cli)
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