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ClusterKinG 1.1.0 documentation
First steps
Readme
Installation
Development
Module documentation
Data
Workers and Results
Scan
Cluster
Benchmark
Stability
Plots
Maths
Utility
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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V
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W
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Y
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__init__() (clusterking.benchmark.AbstractBenchmark method)
(clusterking.benchmark.AbstractBenchmarkResult method)
(clusterking.benchmark.Benchmark method)
(clusterking.cluster.Cluster method)
(clusterking.cluster.ClusterResult method)
(clusterking.cluster.HierarchyCluster method)
(clusterking.cluster.HierarchyClusterResult method)
(clusterking.cluster.KmeansCluster method)
(clusterking.data.Data method)
(clusterking.data.DataWithErrors method)
(clusterking.data.DFMD method)
(clusterking.result.AbstractResult method)
(clusterking.result.DataResult method)
(clusterking.scan.Scanner method)
(clusterking.scan.ScannerResult method)
(clusterking.scan.WilsonScanner method)
(clusterking.stability.fom.AverageBMProximityFOM method)
(clusterking.stability.fom.FOM method)
(clusterking.stability.fom.FOMResult method)
(clusterking.stability.fom.NClusters method)
(clusterking.stability.noisysamplestability.NoisySample method)
(clusterking.stability.noisysamplestability.NoisySampleResult method)
(clusterking.stability.noisysamplestability.NoisySampleStabilityTester method)
(clusterking.stability.noisysamplestability.NoisySampleStabilityTesterResult method)
(clusterking.stability.preprocessor.ClusterMatcher method)
(clusterking.stability.preprocessor.ClusterMatcherResult method)
(clusterking.stability.preprocessor.Preprocessor method)
(clusterking.stability.preprocessor.PreprocessorResult method)
(clusterking.stability.stabilitytester.AbstractStabilityTester method)
(clusterking.stability.stabilitytester.SimpleStabilityTesterResult method)
(clusterking.stability.subsamplestability.SubSampleStabilityTester method)
(clusterking.stability.subsamplestability.SubSampleStabilityVsFraction method)
(clusterking.worker.AbstractWorker method)
(clusterking.worker.DataWorker method)
A
abs2rel_cov() (in module clusterking.maths.statistics)
abs_cov (clusterking.data.DataWithErrors property)
AbstractBenchmark (class in clusterking.benchmark)
AbstractBenchmarkResult (class in clusterking.benchmark)
AbstractResult (class in clusterking.result)
AbstractStabilityTester (class in clusterking.stability.stabilitytester)
AbstractWorker (class in clusterking.worker)
add_err_corr() (clusterking.data.DataWithErrors method)
add_err_cov() (clusterking.data.DataWithErrors method)
add_err_maxcorr() (clusterking.data.DataWithErrors method)
add_err_poisson() (clusterking.data.DataWithErrors method)
add_err_uncorr() (clusterking.data.DataWithErrors method)
add_fom() (clusterking.stability.stabilitytester.AbstractStabilityTester method)
add_rel_err_corr() (clusterking.data.DataWithErrors method)
add_rel_err_cov() (clusterking.data.DataWithErrors method)
add_rel_err_maxcorr() (clusterking.data.DataWithErrors method)
add_rel_err_uncorr() (clusterking.data.DataWithErrors method)
add_spoints_noise() (clusterking.scan.Scanner method)
AverageBMProximityFOM (class in clusterking.stability.fom)
B
basis (clusterking.scan.WilsonScanner property)
Benchmark (class in clusterking.benchmark)
BenchmarkResult (class in clusterking.benchmark)
bin_cols (clusterking.data.Data property)
bin_function() (in module clusterking.maths.binning)
BMFOM (class in clusterking.stability.fom)
BpointList (class in clusterking.stability.fom)
C
CCFOM (class in clusterking.stability.fom)
chi2() (in module clusterking.maths.metric)
chi2_metric() (in module clusterking.maths.metric)
Cluster (class in clusterking.cluster)
cluster_column (clusterking.benchmark.AbstractBenchmark property)
clusterking.benchmark
module
clusterking.cluster
module
clusterking.data
module
clusterking.maths
module
clusterking.maths.binning
module
clusterking.maths.metric
module
clusterking.maths.statistics
module
clusterking.result
module
clusterking.scan
module
clusterking.stability
module
clusterking.stability.fom
module
clusterking.stability.noisysamplestability
module
clusterking.stability.preprocessor
module
clusterking.stability.stabilitytester
module
clusterking.stability.subsamplestability
module
clusterking.util
module
clusterking.util.cli
module
clusterking.util.log
module
clusterking.util.metadata
module
clusterking.worker
module
ClusterMatcher (class in clusterking.stability.preprocessor)
ClusterMatcherResult (class in clusterking.stability.preprocessor)
ClusterResult (class in clusterking.cluster)
clusters() (clusterking.data.Data method)
coeffs (clusterking.scan.Scanner property)
(clusterking.scan.ScannerResult property)
configure_variable() (clusterking.data.Data method)
copy() (clusterking.data.DFMD method)
corr() (clusterking.data.DataWithErrors method)
corr2cov() (in module clusterking.maths.statistics)
cov() (clusterking.data.DataWithErrors method)
cov2corr() (in module clusterking.maths.statistics)
cov2err() (in module clusterking.maths.statistics)
D
Data (class in clusterking.data)
data() (clusterking.data.Data method)
data_id (clusterking.cluster.HierarchyClusterResult property)
DataResult (class in clusterking.result)
DataWithErrors (class in clusterking.data)
DataWorker (class in clusterking.worker)
DeltaNClusters (class in clusterking.stability.fom)
dendrogram() (clusterking.cluster.HierarchyClusterResult method)
df (clusterking.data.Data attribute)
(clusterking.data.DataWithErrors attribute)
(clusterking.data.DFMD attribute)
DFMD (class in clusterking.data)
E
eft (clusterking.scan.WilsonScanner property)
err() (clusterking.data.DataWithErrors method)
F
failsafe_serialize() (in module clusterking.util.metadata)
find_closest_bpoints() (clusterking.data.Data method)
find_closest_spoints() (clusterking.data.Data method)
FirstComeFirstServe1DClusterMatcher (class in clusterking.stability.preprocessor)
fix_param() (clusterking.data.Data method)
FOM (class in clusterking.stability.fom)
FOMResult (class in clusterking.stability.fom)
G
get_clusters() (clusterking.cluster.ClusterResult method)
get_git_info() (in module clusterking.util.metadata)
get_logger() (in module clusterking.util.log)
get_param_values() (clusterking.data.Data method)
get_version() (in module clusterking.util.metadata)
H
handle_overwrite() (in module clusterking.util.cli)
hierarchy (clusterking.cluster.HierarchyClusterResult property)
HierarchyCluster (class in clusterking.cluster)
HierarchyClusterResult (class in clusterking.cluster)
I
imaginary_prefix (clusterking.scan.Scanner property)
(clusterking.scan.ScannerResult property)
K
KmeansCluster (class in clusterking.cluster)
KmeansClusterResult (class in clusterking.cluster)
L
load() (clusterking.stability.noisysamplestability.NoisySampleResult class method)
(clusterking.stability.stabilitytester.SimpleStabilityTesterResult class method)
load_git_info() (in module clusterking.util.metadata)
log (clusterking.data.DFMD attribute)
M
MatchingClusters (class in clusterking.stability.fom)
max_d (clusterking.cluster.HierarchyCluster property)
md (clusterking.cluster.Cluster attribute)
(clusterking.data.DFMD attribute)
metric (clusterking.cluster.HierarchyCluster property)
module
clusterking.benchmark
clusterking.cluster
clusterking.data
clusterking.maths
clusterking.maths.binning
clusterking.maths.metric
clusterking.maths.statistics
clusterking.result
clusterking.scan
clusterking.stability
clusterking.stability.fom
clusterking.stability.noisysamplestability
clusterking.stability.preprocessor
clusterking.stability.stabilitytester
clusterking.stability.subsamplestability
clusterking.util
clusterking.util.cli
clusterking.util.log
clusterking.util.metadata
clusterking.worker
N
n (clusterking.data.Data property)
name (clusterking.stability.fom.FOM property)
(clusterking.stability.preprocessor.Preprocessor property)
named_averaging_fcts (clusterking.stability.fom.AverageBMProximityFOM attribute)
named_metric_fcts (clusterking.stability.fom.AverageBMProximityFOM attribute)
nbins (clusterking.data.Data property)
NClusters (class in clusterking.stability.fom)
nested_dict() (in module clusterking.util.metadata)
NoisySample (class in clusterking.stability.noisysamplestability)
NoisySampleResult (class in clusterking.stability.noisysamplestability)
NoisySampleStabilityTester (class in clusterking.stability.noisysamplestability)
NoisySampleStabilityTesterResult (class in clusterking.stability.noisysamplestability)
norms() (clusterking.data.Data method)
npars (clusterking.data.Data property)
O
only_bpoints() (clusterking.data.Data method)
P
par_cols (clusterking.data.Data property)
plot_bpoint_distance_matrix() (clusterking.data.Data method)
plot_clusters_fill() (clusterking.data.Data method)
plot_clusters_scatter() (clusterking.data.Data method)
plot_dist() (clusterking.data.Data method)
plot_dist_box() (clusterking.data.Data method)
plot_dist_err() (clusterking.data.DataWithErrors method)
plot_dist_minmax() (clusterking.data.Data method)
poisson_errors (clusterking.data.DataWithErrors property)
poisson_errors_scale (clusterking.data.DataWithErrors property)
Preprocessor (class in clusterking.stability.preprocessor)
preprocessor (clusterking.stability.fom.FOM property)
PreprocessorResult (class in clusterking.stability.preprocessor)
R
rel2abs_cov() (in module clusterking.maths.statistics)
rel_cov (clusterking.data.DataWithErrors property)
rename_clusters() (clusterking.data.Data method)
reset_errors() (clusterking.data.DataWithErrors method)
run() (clusterking.benchmark.AbstractBenchmark method)
(clusterking.benchmark.Benchmark method)
(clusterking.cluster.Cluster method)
(clusterking.cluster.HierarchyCluster method)
(clusterking.cluster.KmeansCluster method)
(clusterking.scan.Scanner method)
(clusterking.stability.fom.FOM method)
(clusterking.stability.noisysamplestability.NoisySample method)
(clusterking.stability.noisysamplestability.NoisySampleStabilityTester method)
(clusterking.stability.preprocessor.ClusterMatcher method)
(clusterking.stability.preprocessor.FirstComeFirstServe1DClusterMatcher method)
(clusterking.stability.preprocessor.Preprocessor method)
(clusterking.stability.preprocessor.TrivialClusterMatcher method)
(clusterking.stability.stabilitytester.AbstractStabilityTester method)
(clusterking.stability.subsamplestability.SubSampleStabilityTester method)
(clusterking.stability.subsamplestability.SubSampleStabilityVsFraction method)
(clusterking.worker.AbstractWorker method)
(clusterking.worker.DataWorker method)
S
sample_param() (clusterking.data.Data method)
sample_param_random() (clusterking.data.Data method)
samples (clusterking.stability.noisysamplestability.NoisySampleStabilityTesterResult attribute)
save_git_info() (in module clusterking.util.metadata)
scale (clusterking.scan.WilsonScanner property)
Scanner (class in clusterking.scan)
ScannerResult (class in clusterking.scan)
set_averaging() (clusterking.stability.fom.AverageBMProximityFOM method)
set_cluster_column() (clusterking.benchmark.AbstractBenchmark method)
set_dfunction() (clusterking.scan.Scanner method)
set_fcluster_options() (clusterking.cluster.HierarchyCluster method)
set_fom() (clusterking.benchmark.Benchmark method)
set_global_log_level() (in module clusterking.util.log)
set_hierarchy_options() (clusterking.cluster.HierarchyCluster method)
set_imaginary_prefix() (clusterking.scan.Scanner method)
set_kmeans_options() (clusterking.cluster.KmeansCluster method)
set_max_d() (clusterking.cluster.HierarchyCluster method)
set_metric() (clusterking.benchmark.Benchmark method)
(clusterking.cluster.HierarchyCluster method)
(clusterking.stability.fom.AverageBMProximityFOM method)
set_name() (clusterking.stability.fom.FOM method)
set_no_workers() (clusterking.scan.Scanner method)
set_noise() (clusterking.stability.noisysamplestability.NoisySample method)
set_preprocessor() (clusterking.stability.fom.FOM method)
set_progress_bar() (clusterking.scan.Scanner method)
(clusterking.stability.subsamplestability.SubSampleStabilityTester method)
set_repeat() (clusterking.stability.noisysamplestability.NoisySample method)
(clusterking.stability.subsamplestability.SubSampleStabilityTester method)
set_sampling() (clusterking.stability.subsamplestability.SubSampleStabilityTester method)
set_spoints_equidist() (clusterking.scan.Scanner method)
set_spoints_grid() (clusterking.scan.Scanner method)
SimpleStabilityTesterResult (class in clusterking.stability.stabilitytester)
spoints (clusterking.scan.Scanner property)
(clusterking.scan.ScannerResult property)
StabilityTesterResult (class in clusterking.stability.stabilitytester)
SubSampleStabilityTester (class in clusterking.stability.subsamplestability)
SubSampleStabilityTesterResult (class in clusterking.stability.subsamplestability)
SubSampleStabilityVsFraction (class in clusterking.stability.subsamplestability)
SubSampleStabilityVsFractionResult (class in clusterking.stability.subsamplestability)
T
TrivialClusterMatcher (class in clusterking.stability.preprocessor)
turn_into_nested_dict() (in module clusterking.util.metadata)
V
version_info() (in module clusterking.util.metadata)
W
WilsonScanner (class in clusterking.scan)
WilsonScannerResult (class in clusterking.scan)
worker_id (clusterking.cluster.HierarchyClusterResult property)
write() (clusterking.benchmark.AbstractBenchmarkResult method)
(clusterking.cluster.ClusterResult method)
(clusterking.data.DFMD method)
(clusterking.result.DataResult method)
(clusterking.scan.ScannerResult method)
(clusterking.stability.noisysamplestability.NoisySampleResult method)
(clusterking.stability.stabilitytester.SimpleStabilityTesterResult method)
Y
yn_prompt() (in module clusterking.util.cli)